Drag and drop a PAF file somewhere on the page.
PAF files are typically generated by aligning with
minimap2.
Currently only alignments to
GRCh38 (with accession IDs or chromosome names, ex. 'NC_000001.11' or 'chr1') or
T2T (accession IDs only, ex. 'NC_060925.1') are supported.
The reference should be automatically detected.
Your alignments are visualized on your computer, in the browser - your data does not go anywhere and no one else can see it.
Although it will technically work with a full-size PAF, it
will be SLOW.
We usually filter our PAF files to include only alignments to relevant enriched regions (include only alignments overlapping your adaptive sampling BED file).
Once you're done looking at a file and want to try another, just refresh the page and drop a new one.